For more extensive list, see Google Scholar.

Most recent


Chase, A.B., Z. Gomez-Lunar, A.E. Lopez, J. Li, S.D. Allison, A.C. Martiny, and J.B.H. Martiny. 2018. Emergence of soil bacterial ecotypes along a climate gradient. Environmental Microbiology. https://doi.org/10.1111/1462-2920.14405

Albright, M.B.N., B. Timalsina, J.B.H. Martiny, and J. Dunbar. 2018. Comparative genomics of nitrogen cycling pathways in Bacteria and Archaea. Microbial Ecology. https://doi.org/10.1007/s00248-018-1239-4 pdf

Baker, N., B. Khalili, J.B.H. Martiny, and S. D. Allison. 2018. Microbial decomposers not constrained by climate history along an elevation gradient in southern California. Ecology. 99: 1441-1452.

Albright, M.B.N., and J.B.H. Martiny. 2018. Is throwing an apple core out of the car littering? Microbial communities in natural composting. Frontiers for Young Minds. 6:13 doi: 10.3389/frym.2018.00013

J.B.H. Martiny and K.E. Walters. 2018. Towards a natural history of soil bacterial communities. Trends in Microbiology. doi: 10.1016/j.tim.2018.02.010

Chase, A.B. and J.B.H. Martiny. 2018. The importance of resolving biogeographic patterns of microbial microdiversity. Microbiology Australia. 39: doi: 10.1071/MA18003.

Curd, E.E., J.B.H. Martiny, H. Li, and T.B. Smith. 2018. Bacterial diversity is positively correlated with soil heterogeneity. Ecosphere. doi: 10.1002/ecs2.2079

Albright, M.B.N. and J.B.H. Martiny. 2018. Dispersal alters bacterial diversity and composition in a natural community. The ISME Journal 12: 296-299.

Chase, A.B. U. Karaoz, E.L. Brodie, Z. Gomez-Lunar, A.C. Martiny, and J.B.H. Martiny. 2017. Microdiversity of an abundant terrestrial bacterium encompasses extensive variation in ecologically-relevant traits. mBio. 6: e01809-17.

Dolan, K.L., J. Pena, S.D. Allison, and J.B.H. Martiny. 2017. Phylogenetic conservation of substrate use specialization in leaf litter bacteria. PlosONE 12: e0174472.

Balshor, B., M. Garrambone, P. Austin, K. Balazs, C. Weihe, J.B.H. Martiny, T. Huxman, J. McCollum, S. Kimball. 2017. The effect of soil inoculants on seed germination of native and invasive species. Botany. 95: 469-480.

Martiny, J.B.H., A.C. Martiny, C. Weihe, Y. Lu, R. Berlemont, E.L. Brodie, M.L. Goulden, K.K. Treseder, and S.D. Allison. 2017. Microbial legacies alter decomposition in response to simulated global change. The ISME Journal. 11: 490-499.

Chase, A.B., P. Arevalo, M.F. Polz, R. Berlemont, and J.B.H. Martiny. 2016. Evidence for ecological flexibility in the cosmopolitan genus Curtobacterium. Frontiers in Microbiology. 7:1874.

Marston, M.F. and J.B.H. Martiny. 2016. Genomic diversification of marine cyanophages into stable ecotypes. Environmental Microbiology. 18: 4240-4253.

Crummett*, L.C., R.J. Puxty*, C. Weihe, M.F. Marston, and J.B.H. Martiny. 2016. The genomic content and context of auxiliary metabolic genes in marine cyanomyoviruses. Virology. 499:219-229.

Evans, S., J.B.H. Martiny, S.D. Allison. 2016. Effects of dispersal and selection on stochastic assembly in microbial communities. The ISME Journal. doi: 10.1038/ismej.2016.96.

Nelson, M.B., A.C. Martiny, and J.B.H. Martiny. 2016. Global biogeography of microbial nitrogen-cycling traits in soil. Proceedings of the National Academy of Sciences. 113: 8033-8040.

Nelson, M.B., A.B. Chase, J.B.H. Martiny. 2016, et al. The Microbial Olympics 2016. Nature Microbiology. 1:16122.

Hanson, C.A., M.F. Marston, and J.B.H. Martiny. 2016. Biogeographic variation in host range phenotypes and taxonomic composition of marine cyanophage isolates. Frontiers in Microbiology. 7:983.

Martiny, J.B.H. 2016. History leaves its mark on soil bacterial diversity. mBio. 7:e00784-16.

Amend, A.S., A.C. Martiny, S.D. Allison, R. Berlemont, M.L. Goulden, Y. Lu, K.K. Treseder, C. Weihe, and J.B.H. Martiny. 2016. Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. The ISME Journal. 10:109-118.


Other representative publications

Martiny, J.B.H, S.E. Jones, J.T. Lennon, and A.C. Martiny. 2015. Microbiomes in light of traits: a phylogenetic perspective. Science 350: aac9323.

Martiny, J.B.H., L. Riemann, M.F. Marston, and M. Middleboe. 2014. Antagonistic coevolution of marine planktonic viruses and their hosts. Annual Review of Marine Science. 6: 393-414.

Reed, H.E. and J.B.H. Martiny. 2013. Microbial composition affects the functioning of estuarine sediments. The ISME Journal. 7: 868-879.

Hanson, C.A., J. Fuhrman, M.C. Horner-Devine, and J.B.H. Martiny. 2012. Beyond biogeographic patterns: processes shaping the microbial landscape. Nature Reviews Microbiology. 10:497-506.

Marston, M.F., F.J. Pierciey Jr., A. Shepard, G. Gearin, J. Qi, C. Yandava, S.C. Schuster, M.R. Henn, and J.B.H. Martiny. 2012. Rapid diversification of coevolving marine Synechococcus and a virus. Proceedings of the National Academy of Sciences 109:4544-4549.

Martiny, J.B.H., J.A. Eisen, K. Penn, S.D. Allison, and M.C. Horner-Devine. 2011. Drivers of bacterial beta-diversity depend on spatial scale. Proceedings of the National Academy of Sciences 108: 7850-7854.

Allison, S. and J.B.H. Martiny 2008. “Resistance, resilience, and redundancy in microbial communities”.
Proceedings of the National Academy of Sciences 105: 11512-11519.

Bradley, D.J., G.S. Gilbert, and J.B.H. Martiny. 2008. Pathogens promote plant diversity through a compensatory response. Ecology Letters 11:461-469.

Reed, H.E. and J.B.H. Martiny. 2007. Testing the functional significance of microbial composition in natural communities. FEMS Microbiology Ecology 62:161-170.

Martiny, J.B.H., B. Bohannan, J. Brown, R. Colwell, J. Fuhrman, J. Green, M.C. Horner-Devine, M. Kane, J. Krumins, C. Kuske, P. Morin, S. Naeem, L. Ovreas, A.-L. Reysenbach, V. Smith, J. Staley. 2006. “Microbial biogeography: Putting microorganisms on the map.” Nature Reviews Microbiology 4: 102-112.

(formerly published as J.B. Hughes)

Horner-Devine*, M.C., M. Lage*, J.B. Hughes, and B.J.M. Bohannan. 2004. A taxa-area relationship for bacteria. Nature 432: 750-753.

Hughes, J.B., J.J. Hellmann, T.H. Ricketts, and B.J.M. Bohannan. 2001. Counting the uncountable: statistical approaches to estimating microbial diversity. Applied and Environmental Microbiology 67: 4399-4406.

Hughes, J.B. and J. Roughgarden. 1998. Aggregate community properties and the strength of species’ interactions. Proceedings of the National Academy of Sciences 95: 6837-6842.

Hughes, J.B., G.C. Daily, and P.R. Ehrlich. 1997. Population diversity: Its extent and extinction. Science 278: 689-692.

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