For more extensive list, see Google Scholar.
Balshor, B., M. Garrambone, P. Austin, K. Balazs, C. Weihe, J.B.H. Martiny, T. Huxman, J. McCollum, S. Kimball. In press. The effect of soil inoculants on seed germination of native and invasive species. Botany. 10.1139/cjb-2016-0248.
Chase, A.B., P. Arevalo, M.F. Polz, R. Berlemont, and J.B.H. Martiny. 2016. Evidence for ecological flexibility in the cosmopolitan genus Curtobacterium. Frontiers in Microbiology. 7:1874.
Martiny, J.B.H., A.C. Martiny, C. Weihe, Y. Lu, R. Berlemont, E.L. Brodie, M.L. Goulden, K.K. Treseder, and S.D. Allison. In press. Microbial legacies alter decomposition in response to simulated global change. The ISME Journal.
Marston, M.F. and J.B.H. Martiny. In press. Genomic diversification of marine cyanophages into stable ecotypes. Environmental Microbiology.
Crummett*, L.C., R.J. Puxty*, C. Weihe, M.F. Marston, and J.B.H. Martiny. 2016. The genomic content and context of auxiliary metabolic genes in marine cyanomyoviruses. Virology. 499:219-229.
Evans, S., J.B.H. Martiny, S.D. Allison. 2016. Effects of dispersal and selection on stochastic assembly in microbial communities. The ISME Journal. doi: 10.1038/ismej.2016.96.
Nelson, M.B., A.C. Martiny, and J.B.H. Martiny. 2016. Global biogeography of microbial nitrogen-cycling traits in soil. Proceedings of the National Academy of Sciences. 113: 8033-8040.
Nelson, M.B., A.B. Chase, J.B.H. Martiny. 2016, et al. The Microbial Olympics 2016. Nature Microbiology. 1:16122.
Hanson, C.A., M.F. Marston, and J.B.H. Martiny. 2016. Biogeographic variation in host range phenotypes and taxonomic composition of marine cyanophage isolates. Frontiers in Microbiology. 7:983.
Martiny, J.B.H. 2016. History leaves its mark on soil bacterial diversity. mBio. 7:e00784-16.
Amend, A.S., A.C. Martiny, S.D. Allison, R. Berlemont, M.L. Goulden, Y. Lu, K.K. Treseder, C. Weihe, and J.B.H. Martiny. 2016 “Microbial response to simulated global change is phylogenetically conserved and linked with functional potential. The ISME Journal. 10:109-118.
Martiny, J.B.H, S.E. Jones, J.T. Lennon, and A.C. Martiny. 2015. Microbiomes in light of traits: a phylogenetic perspective. Science 350: aac9323. Free pdf.
Nelson, M.B., R. Berlemont, A.C. Martiny, and J.B.H. Martiny. 2015. Nitrogen cycling potential of a grassland litter microbial community. Applied and Environmental Microbiology. doi: 10.1128/AEM.02222-15.
Martiny, J.B.H. 2015. Dispersal and the Microbiome. Microbe 10: 191-196.
Matulich, K.L., C. Weihe, S.D. Allison, A.S. Amend, R. Berlemont, M.L. Goulden, S. Kimball, A.C. Martiny, and J.B.H. Martiny. 2015. Temporal variation overshadows the response of leaf litter microbial communities to simulated global change. The ISME Journal. 9:2477-2489.
Vivanco, L., I. Irvine, and J.B.H. Martiny. 2015. Nonlinear responses in salt marsh functioning to increased nitrogen addition. Ecology. 96: 936-947.
Amend A.S., K.L. Matulich, and J.B.H. Martiny. 2015. Nitrogen addition, not initial phylogenetic diversity, increases litter decomposition by fungal communities. Frontiers in Microbiology. 6:109.
Matulich, K.L. and J.B.H. Martiny. 2015. Microbial composition alters the response of litter decomposition to environmental change. Ecology. 96:154-163.
Auyeung, D.N., J.B.H. Martiny, and J.S. Dukes. 2015. Nitrification kinetics and ammonia-oxidizing community respond to warming and altered precipitation. Ecosphere 6:art83.
Other representative publications
Martiny, J.B.H., L. Riemann, M.F. Marston, and M. Middleboe. 2014. Antagonistic coevolution of marine planktonic viruses and their hosts. Annual Review of Marine Science. 6: 393-414.
Reed, H.E. and J.B.H. Martiny. 2013. Microbial composition affects the functioning of estuarine sediments. The ISME Journal. 7: 868-879.
Hanson, C.A., J. Fuhrman, M.C. Horner-Devine, and J.B.H. Martiny. 2012. Beyond biogeographic patterns: processes shaping the microbial landscape. Nature Reviews Microbiology. 10:497-506.
Marston, M.F., F.J. Pierciey Jr., A. Shepard, G. Gearin, J. Qi, C. Yandava, S.C. Schuster, M.R. Henn, and J.B.H. Martiny. 2012. Rapid diversification of coevolving marine Synechococcus and a virus. Proceedings of the National Academy of Sciences 109:4544-4549.
Martiny, J.B.H., J.A. Eisen, K. Penn, S.D. Allison, and M.C. Horner-Devine. 2011. “Drivers of bacterial beta-diversity depend on spatial scale.” Proceedings of the National Academy of Sciences 108: 7850-7854.
Allison, S. and J.B.H. Martiny 2008. “Resistance, resilience, and redundancy in microbial communities”.
Proceedings of the National Academy of Sciences 105: 11512-11519.
Bradley, D.J., G.S. Gilbert, and J.B.H. Martiny. 2008. “Pathogens promote plant diversity through a compensatory response.” Ecology Letters 11:461-469.
Reed, H.E. and J.B.H. Martiny. 2007. Testing the functional significance of microbial composition in natural communities. FEMS Microbiology Ecology 62:161-170.
Martiny, J.B.H., B. Bohannan, J. Brown, R. Colwell, J. Fuhrman, J. Green, M.C. Horner-Devine, M. Kane, J. Krumins, C. Kuske, P. Morin, S. Naeem, L. Ovreas, A.-L. Reysenbach, V. Smith, J. Staley. 2006. “Microbial biogeography: Putting microorganisms on the map.” Nature Reviews Microbiology 4: 102-112.
(formerly published as J.B. Hughes)
Horner-Devine*, M.C., M. Lage*, J.B. Hughes, and B.J.M. Bohannan. 2004. “A taxa-area relationship for bacteria.” Nature 432: 750-753.
Hughes, J.B., J.J. Hellmann, T.H. Ricketts, and B.J.M. Bohannan. 2001. “Counting the uncountable: statistical approaches to estimating microbial diversity.” Applied and Environmental Microbiology 67: 4399-4406.
Hughes, J.B. and J. Roughgarden. 1998. “Aggregate community properties and the strength of species’ interactions.” Proceedings of the National Academy of Sciences 95: 6837-6842.
Hughes, J.B., G.C. Daily, and P.R. Ehrlich. 1997. “Population diversity: Its extent and extinction.” Science 278: 689-692.
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